gunfolds

• conversions
  • clingo
    • a2edgetuple
      • a2edgetuple()
    • c2edgepairs
      • c2edgepairs()
    • clingo2num
      • clingo2num()
    • clingo_preamble
      • clingo_preamble()
    • clingo_wedge
      • clingo_wedge()
    • drasl_jclingo2g
      • drasl_jclingo2g()
    • encode_list_sccs
      • encode_list_sccs()
    • encode_sccs
      • encode_sccs()
    • g2clingo
      • g2clingo()
    • g2wclingo
      • g2wclingo()
    • msl_jclingo2g
      • msl_jclingo2g()
    • numbered_g2clingo
      • numbered_g2clingo()
    • numbered_g2wclingo
      • numbered_g2wclingo()
    • old_g2clingo
      • old_g2clingo()
    • rasl_a2edgetuple
      • rasl_a2edgetuple()
    • rasl_c2edgepairs
      • rasl_c2edgepairs()
    • rasl_jclingo2g
      • rasl_jclingo2g()
    • rate
      • rate()
  • external
    • g2ig
      • g2ig()
    • graph2dot
      • graph2dot()
    • graph2nx
      • graph2nx()
    • nx2graph
      • nx2graph()
  • internal
    • adjs2graph
      • adjs2graph()
    • bg2num
      • bg2num()
    • dict_format_converter
      • dict_format_converter()
    • edgepairs2g
      • edgepairs2g()
    • g2ian
      • g2ian()
    • g2num
      • g2num()
    • g2vec
      • g2vec()
    • Glag2CG
      • Glag2CG()
    • graph2adj
      • graph2adj()
    • graph2badj
      • graph2badj()
    • ian2g
      • ian2g()
    • nodenum
      • nodenum()
    • num2CG
      • num2CG()
    • nxbp2graph
      • nxbp2graph()
    • ug2num
      • ug2num()
    • vec2adj
      • vec2adj()
    • vec2g
      • vec2g()
• estimation
  • grangercausality
    • gc
      • gc()
  • linear_model
    • AB2intAB
      • AB2intAB()
    • amap
      • amap()
    • bnf2CG
      • bnf2CG()
    • data2AB
      • data2AB()
    • data2graph
      • data2graph()
    • data2VARgraph
      • data2VARgraph()
    • decide_absences
      • decide_absences()
    • drawsamplesLG
      • drawsamplesLG()
    • drawsamplesMA
      • drawsamplesMA()
    • estimateG
      • estimateG()
    • estimateSVAR
      • estimateSVAR()
    • G2AH
      • G2AH()
    • G2SVAR
      • G2SVAR()
    • genData
      • genData()
    • getAgraph
      • getAgraph()
    • getAring
      • getAring()
    • initRandomMatrix
      • initRandomMatrix()
    • listplace
      • listplace()
    • nllf
      • nllf()
    • nllf2
      • nllf2()
    • noiseData
      • noiseData()
    • npG2SVAR
      • npG2SVAR()
    • presence_probs
      • presence_probs()
    • randomSVAR
      • randomSVAR()
    • randomSVARs
      • randomSVARs()
    • randweights
      • randweights()
    • sampleWeights
      • sampleWeights()
    • scoreAGraph
      • scoreAGraph()
    • stableVAR
      • stableVAR()
    • symchol
      • symchol()
    • transitionMatrix
      • transitionMatrix()
    • transitionMatrix2
      • transitionMatrix2()
    • transitionMatrix3
      • transitionMatrix3()
    • transitionMatrix4
      • transitionMatrix4()
    • VARbic
      • VARbic()
    • weight_and_mask
      • weight_and_mask()
    • x2M
      • x2M()
  • pc
    • dpc
      • dpc()
    • fdr
      • fdr()
    • fdrCutoff
      • fdrCutoff()
    • fdrQ
      • fdrQ()
    • independent
      • independent()
    • independent_
      • independent_()
    • kernel
      • kernel()
    • moment22
      • moment22()
    • np_fisherZ
      • np_fisherZ()
    • residuals_
      • residuals_()
• solvers
  • declarative
    • clingo_msl
      • g2clingo_msl
      • msl
      • msl_command
      • rasl_msl
      • rate
    • clingo_rasl
      • drasl
      • drasl_command
      • drate
      • glist2str
      • rasl
      • rasl_command
      • rate
      • weighted_drasl_program
  • imperative
    • traversal
      • add2edges
      • addaAedge
      • addacedge
      • addanedge
      • addapath
      • addavedge
      • addaVpath
      • check3
      • checkable
      • checkAedge
      • checkApath
      • checkbedges
      • checkcedge
      • checkedge
      • checker
      • checkerDS
      • checkvedge
      • childrenedges
      • chunks
      • cleanedges
      • cleanVedges
      • cloneempty
      • conformanceDS
      • del2edges
      • del_empty
      • delaAedge
      • delacedge
      • delanedge
      • delapath
      • delavedge
      • delaVpath
      • edge_function_idx
      • edge_increment_ok
      • esig
      • forks
      • gpurgepath
      • gsig
      • inorder_check2
      • inorder_checks
      • invertCDSelement
      • isAedge
      • isApath
      • isCedge
      • isedge
      • isvedge
      • length_d_loopy_paths
      • length_d_paths
      • longpaths_pick
      • make_allforks_and_rest
      • make_emptyforks
      • make_fullforks
      • make_longpaths
      • makechains
      • makesink
      • makesinks
      • mask2edges
      • maskaAedge
      • maskaCedge
      • maskanedge
      • maskapath
      • maskavedge
      • maskaVpath
      • memo_no_return
      • ok2add2edges
      • ok2addaAedge
      • ok2addacedge
      • ok2addanedge
      • ok2addanedge1
      • ok2addanedge2
      • ok2addapath
      • ok2addavedge
      • ok2addaVpath
      • prune_sort_CDS
      • prunepaths_1D
      • purgepath
      • selfloops
      • signature
      • single_nodes
      • supergraphs_in_eq
      • threedges_pick
      • try_till_d_path
      • try_till_path
      • twoedges_pick
      • v2g22g1
      • vedgelist
    • unknownrate
      • add2set_
      • add2set_loop
      • allsloops
      • bconflictor
      • build_loop_step
      • cacheconflicts
      • conflictor
      • conflictor_set
      • conflictors
      • confpairs
      • del_loop
      • delAloop
      • e2num
      • ekey2e
      • forward_loop_match
      • gen_loops
      • iteqclass
      • lconflictors
      • lconfpairs
      • le2num
      • liteqclass
      • loop2graph
      • main
      • matchAloop
      • perm_circular
      • prune_conflicts
      • prune_loops
      • reverse
      • reverse_edge_match
      • reverse_loop_match
      • skip_conflict
      • skip_conflictors
      • start_progress_bar
• utils
  • bfutils
    • all_undersamples
      • all_undersamples()
    • bidirected_inc
      • bidirected_inc()
    • call_u_conflicts
      • call_u_conflicts()
    • call_u_conflicts2
      • call_u_conflicts2()
    • call_u_conflicts_d
      • call_u_conflicts_d()
    • call_u_equals
      • call_u_equals()
    • call_u_equals2
      • call_u_equals2()
    • call_undersamples
      • call_undersamples()
    • cc_all
      • cc_all()
    • cc_undersamples
      • cc_undersamples()
    • check_conflict
      • check_conflict()
    • check_conflict_
      • check_conflict_()
    • check_equality
      • check_equality()
    • compact_call_undersamples
      • compact_call_undersamples()
    • compat
      • compat()
    • compatible
      • compatible()
    • dens2edgenum
      • dens2edgenum()
    • dincrement_u
      • dincrement_u()
    • directed_inc
      • directed_inc()
    • edgenum2dens
      • edgenum2dens()
    • forms_loop
      • forms_loop()
    • iall
      • iall()
    • icompat
      • icompat()
    • ilength
      • ilength()
    • increment
      • increment()
    • increment_u
      • increment_u()
    • is_sclique
      • is_sclique()
    • loadgraphs
      • loadgraphs()
    • make_rect
      • make_rect()
    • overshoot
      • overshoot()
    • pure_directed_inc
      • pure_directed_inc()
    • savegraphs
      • savegraphs()
    • undersample
      • undersample()
  • calc_procs
    • get_process_count
      • get_process_count()
  • clingo
    • clingo
      • clingo()
    • run_clingo
      • run_clingo()
  • comparison
    • compatible_at_u
      • compatible_at_u()
    • gcd4scc
      • gcd4scc()
    • has_root
      • has_root()
    • has_self_loops
      • has_self_loops()
    • has_sink
      • has_sink()
    • randSCC
      • randSCC()
    • search_match
      • search_match()
    • SM_converging
      • SM_converging()
    • SM_fixed
      • SM_fixed()
  • ecj
    • cloneBfree
      • cloneBfree()
    • dfs_topsort
      • dfs_topsort()
    • gcd
      • gcd()
    • has_unit_cycle
      • has_unit_cycle()
    • listgcd
      • listgcd()
    • listgcd_r
      • listgcd_r()
    • reachable
      • reachable()
    • scc
      • scc()
    • tr
      • tr()
    • walk
      • walk()
  • graphkit
    • _normed_OCE
      • _normed_OCE()
    • _normed_undirected_OCE
      • _normed_undirected_OCE()
    • _OCE
      • _OCE()
    • _undirected_OCE
      • _undirected_OCE()
    • addanedge
      • addanedge()
    • addAring
      • addAring()
    • addedges
      • addedges()
    • bedgelist
      • bedgelist()
    • bidirected_no_fork
      • bidirected_no_fork()
    • bp_mean_degree_graph
      • bp_mean_degree_graph()
    • bp_pow_degree_graph
      • bp_pow_degree_graph()
    • cerror
      • cerror()
    • clean_leaf_nodes
      • clean_leaf_nodes()
    • complement
      • complement()
    • degree_ring
      • degree_ring()
    • delanedge
      • delanedge()
    • deledges
      • deledges()
    • density
      • density()
    • digonly
      • digonly()
    • edgelist
      • edgelist()
    • ensure_gcd1
      • ensure_gcd1()
    • ensure_graph_gcd1
      • ensure_graph_gcd1()
    • fullyconnected
      • fullyconnected()
    • gcd1_bp_mean_degree_graph
      • gcd1_bp_mean_degree_graph()
    • gcd4scc
      • gcd4scc()
    • gtranspose
      • gtranspose()
    • inbedgelist
      • inbedgelist()
    • inedgelist
      • inedgelist()
    • isdedgesubset
      • isdedgesubset()
    • isedgesubset
      • isedgesubset()
    • mean_degree_graph
      • mean_degree_graph()
    • merge_graphs
      • merge_graphs()
    • merge_list
      • merge_list()
    • no_children
      • no_children()
    • no_parents
      • no_parents()
    • OCE
      • OCE()
    • oerror
      • oerror()
    • pow_degree_graph
      • pow_degree_graph()
    • randH
      • randH()
    • randomDAG
      • randomDAG()
    • randomTRIL
      • randomTRIL()
    • remove_loop
      • remove_loop()
    • remove_tril_singletons
      • remove_tril_singletons()
    • ring
      • ring()
    • ring_sccs
      • ring_sccs()
    • ringarcs
      • ringarcs()
    • ringmore
      • ringmore()
    • scale_free
      • scale_free()
    • scc_unreachable
      • scc_unreachable()
    • selfloop
      • selfloop()
    • shift_labels
      • shift_labels()
    • shift_list_labels
      • shift_list_labels()
    • subgraph
      • subgraph()
    • superclique
      • superclique()
    • udensity
      • udensity()
    • undedgelist
      • undedgelist()
    • upairs
      • upairs()
    • update_graph
      • update_graph()
  • myTimeout
    • timeout
      • timeout()
  • neighborhoods
    • find_nearest_reachable
      • find_nearest_reachable()
    • hamming_neighbors
      • hamming_neighbors()
    • ncr
      • ncr()
    • num_nATstep
      • num_nATstep()
    • num_neighbors
      • num_neighbors()
  • simpleloops
    • print_loops
      • print_loops()
    • simple_loops
      • simple_loops()
  • zickle
    • load
      • load()
    • save
      • save()
• viz
  • dbn2latex
    • addselfedge
      • addselfedge()
    • cdbn_single
      • cdbn_single()
    • cdbnprint
      • cdbnprint()
    • cdbnsingle
      • cdbnsingle()
    • cdbnwrap
      • cdbnwrap()
    • dbnprint
      • dbnprint()
    • dict2graph
      • dict2graph()
    • emacs_vars
      • emacs_vars()
    • foldplot
      • foldplot()
    • g_single
      • g_single()
    • getangle
      • getangle()
    • gmatrix_fold
      • gmatrix_fold()
    • gmatrix_list
      • gmatrix_list()
    • gprint
      • gprint()
    • graph2dict
      • graph2dict()
    • gsingle
      • gsingle()
    • matrix_edges
      • matrix_edges()
    • matrix_end
      • matrix_end()
    • matrix_fold
      • matrix_fold()
    • matrix_grid
      • matrix_grid()
    • matrix_list
      • matrix_list()
    • matrix_start
      • matrix_start()
    • output_graph_figure
      • output_graph_figure()
    • paintSCC
      • paintSCC()
    • unfoldplot
      • unfoldplot()
  • gtool
    • circ_position
      • circ_position()
    • colorcomponents
      • colorcomponents()
    • every_edge_control_points
      • every_edge_control_points()
    • g2gt
      • g2gt()
    • getscreensize
      • getscreensize()
    • gt2g
      • gt2g()
    • hshift
      • hshift()
    • linegraph
      • linegraph()
    • plotg
      • plotg()
    • plotgunfolds
      • plotgunfolds()