graphkit ======== .. currentmodule:: gunfolds.utils.graphkit \_normed\_OCE ------------- .. autofunction:: gunfolds.utils.graphkit._normed_OCE \_normed\_undirected\_OCE ------------------------- .. autofunction:: gunfolds.utils.graphkit._normed_undirected_OCE \_OCE ----- .. autofunction:: gunfolds.utils.graphkit._OCE \_undirected\_OCE ----------------- .. autofunction:: gunfolds.utils.graphkit._undirected_OCE addanedge --------- .. autofunction:: gunfolds.utils.graphkit.addanedge addAring -------- .. autofunction:: gunfolds.utils.graphkit.addAring addedges -------- .. autofunction:: gunfolds.utils.graphkit.addedges bedgelist --------- .. autofunction:: gunfolds.utils.graphkit.bedgelist bidirected\_no\_fork -------------------- .. autofunction:: gunfolds.utils.graphkit.bidirected_no_fork bp\_mean\_degree\_graph ----------------------- .. autofunction:: gunfolds.utils.graphkit.bp_mean_degree_graph bp\_pow\_degree\_graph ---------------------- .. autofunction:: gunfolds.utils.graphkit.bp_pow_degree_graph cerror ------ .. autofunction:: gunfolds.utils.graphkit.cerror clean\_leaf\_nodes ------------------ .. autofunction:: gunfolds.utils.graphkit.clean_leaf_nodes complement ---------- .. autofunction:: gunfolds.utils.graphkit.complement degree\_ring ------------ .. autofunction:: gunfolds.utils.graphkit.degree_ring delanedge --------- .. autofunction:: gunfolds.utils.graphkit.delanedge deledges -------- .. autofunction:: gunfolds.utils.graphkit.deledges density ------- .. autofunction:: gunfolds.utils.graphkit.density digonly ------- .. autofunction:: gunfolds.utils.graphkit.digonly edgelist -------- .. autofunction:: gunfolds.utils.graphkit.edgelist ensure\_gcd1 ------------ .. autofunction:: gunfolds.utils.graphkit.ensure_gcd1 ensure\_graph\_gcd1 ------------------- .. autofunction:: gunfolds.utils.graphkit.ensure_graph_gcd1 fullyconnected -------------- .. autofunction:: gunfolds.utils.graphkit.fullyconnected gcd1\_bp\_mean\_degree\_graph ----------------------------- .. autofunction:: gunfolds.utils.graphkit.gcd1_bp_mean_degree_graph gcd4scc ------- .. autofunction:: gunfolds.utils.graphkit.gcd4scc gtranspose ---------- .. autofunction:: gunfolds.utils.graphkit.gtranspose inbedgelist ----------- .. autofunction:: gunfolds.utils.graphkit.inbedgelist inedgelist ---------- .. autofunction:: gunfolds.utils.graphkit.inedgelist isdedgesubset ------------- .. autofunction:: gunfolds.utils.graphkit.isdedgesubset isedgesubset ------------ .. autofunction:: gunfolds.utils.graphkit.isedgesubset mean\_degree\_graph ------------------- .. autofunction:: gunfolds.utils.graphkit.mean_degree_graph merge\_graphs ------------- .. autofunction:: gunfolds.utils.graphkit.merge_graphs merge\_list ----------- .. autofunction:: gunfolds.utils.graphkit.merge_list no\_children ------------ .. autofunction:: gunfolds.utils.graphkit.no_children no\_parents ----------- .. autofunction:: gunfolds.utils.graphkit.no_parents OCE --- .. autofunction:: gunfolds.utils.graphkit.OCE oerror ------ .. autofunction:: gunfolds.utils.graphkit.oerror pow\_degree\_graph ------------------ .. autofunction:: gunfolds.utils.graphkit.pow_degree_graph randH ----- .. autofunction:: gunfolds.utils.graphkit.randH randomDAG --------- .. autofunction:: gunfolds.utils.graphkit.randomDAG randomTRIL ---------- .. autofunction:: gunfolds.utils.graphkit.randomTRIL remove\_loop ------------ .. autofunction:: gunfolds.utils.graphkit.remove_loop remove\_tril\_singletons ------------------------ .. autofunction:: gunfolds.utils.graphkit.remove_tril_singletons ring ---- .. autofunction:: gunfolds.utils.graphkit.ring ring\_sccs ---------- .. autofunction:: gunfolds.utils.graphkit.ring_sccs ringarcs -------- .. autofunction:: gunfolds.utils.graphkit.ringarcs ringmore -------- .. autofunction:: gunfolds.utils.graphkit.ringmore scale\_free ----------- .. autofunction:: gunfolds.utils.graphkit.scale_free scc\_unreachable ---------------- .. autofunction:: gunfolds.utils.graphkit.scc_unreachable selfloop -------- .. autofunction:: gunfolds.utils.graphkit.selfloop shift\_labels ------------- .. autofunction:: gunfolds.utils.graphkit.shift_labels shift\_list\_labels ------------------- .. autofunction:: gunfolds.utils.graphkit.shift_list_labels subgraph -------- .. autofunction:: gunfolds.utils.graphkit.subgraph superclique ----------- .. autofunction:: gunfolds.utils.graphkit.superclique udensity -------- .. autofunction:: gunfolds.utils.graphkit.udensity undedgelist ----------- .. autofunction:: gunfolds.utils.graphkit.undedgelist upairs ------ .. autofunction:: gunfolds.utils.graphkit.upairs update\_graph ------------- .. autofunction:: gunfolds.utils.graphkit.update_graph